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Update pipeline initializer

Himmelsbach, Zachary requested to merge dev_pipeline_init into master

Update pipeline initializer to

  1. Use camr_process_redcap_vars for new instruments
  2. Keep standard function names for existing functions
  3. Use camr_guarantee_fields for new instruments

Now very little code needs to be written for new instruments (just derived variables like scale-scores, etc).

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